NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1010739

Scaffold Ga0209535_1010739


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1010739 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5163
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002182Metagenome / Metatranscriptome586Y
F002412Metagenome / Metatranscriptome561Y
F006271Metagenome / Metatranscriptome377Y
F037809Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_101073910F002412N/AMLVRALIIYITLTSIAVAFHEHTFAVWELREQLQMLYMNMWELLHQLEYVTSDQRVIVYEEIQHIQSEIQRVITELVGHDRSQHP
Ga0209535_101073911F002182AGGAMIYTDQENEWLSTPSKKKTKRVSNQTADGSAPKAQDYRKHDWAITTTIEVNGKTYIVPVQ
Ga0209535_10107392F006271N/AMLIYGNTPKDIMKMMWRRRIKMLSIIVVIAVAVMLMGCTIGSKKVNPPLMALDKFWDTLGSGDNKTKKDLVEEAK
Ga0209535_10107398F037809AGAAGGMIKKLLVGFALLTLVACSSAEANDVADDGKCLDDIKHYNHLVKTTGASDSDKASAVVERDKGSEAWAQGDKEACETAYQAAWALID
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