NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1006690

Scaffold Ga0209535_1006690


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1006690 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6910
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (94.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008558Metagenome / Metatranscriptome331Y
F009636Metagenome / Metatranscriptome315Y
F101346Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100669015F008558AGGAGMFNNVGHPIEGFAILECHPDQTPTIMSTHQCLGNAEEEKMVLNEMAEGTDITFVVKETFGCMIETV
Ga0209535_100669017F009636GGAGMGYFYQDWKEKKMFVEDNKGQFVMNFGEAEKSMIENLERHVINLTEGASDEKRMAIGYMEYLADCLKKGKLEVKWNIS
Ga0209535_10066907F101346AGGAMMANDEKTTNIVQFPKKYMGIAPKVTNFDAMRLNKELQFADELTDGIMVSMIHNMDENDIEITDPGFIQDIAFLSEAIKATIYRDRGFTHPFQNLIELIANVTYDEKEKRHHVDMDMDLIRELSEDFEDDGPEKA
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