NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1006414

Scaffold Ga0209535_1006414


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1006414 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7075
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003043Metagenome511Y
F003872Metagenome / Metatranscriptome464Y
F061976Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10064146F003872N/AMSRISKRKLIKVLKGEYEEPTYNKKSLLEHLAKPVTQEEWLKGYNEWKKKQLAND
Ga0209535_10064148F003043N/AMTILITGGNGNLANSLKKYLDGDYYGKDMLDLTDRNCIRNLQNYDILIHTATGNNKININLPLLFSKAKKIFAFTSKQGTFLNWKKPGPIDYGLEKLTLNFIVYRQNMEKHNAQIFEPGHMETKEHYDNIAKKFSELYLDWKFEKNAIYELPNDRYIPY
Ga0209535_10064149F061976N/ASMDNEVMKKLTVFFMNANITKALEKKFSTRLQFKSVDVWIDGKGYKLPPHTDDPSIKLHLQVYLSNNNEGTSLYDSAGELLYTFPFKANYGYALYNGVYSHHGVEEVENDDRTSLYVRYQ
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