| Basic Information | |
|---|---|
| Taxon OID | 3300025120 Open in IMG/M |
| Scaffold ID | Ga0209535_1000489 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-28 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 28320 |
| Total Scaffold Genes | 48 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (16.67%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 48.9699 | Long. (o) | -130.6666 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008497 | Metagenome / Metatranscriptome | 332 | Y |
| F033812 | Metagenome / Metatranscriptome | 176 | N |
| F039582 | Metagenome | 163 | N |
| F048321 | Metagenome | 148 | N |
| F087212 | Metagenome | 110 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209535_10004892 | F048321 | N/A | MEHWVQNIAANKLSLNIYNQCVDAEGNYFLIGVIDDQTRVATYGAFSPVARSQRAIRFDVPTNAAPFNALKTNSFYNVVVYEQTNDTNIIPTDAVVLGLRWEGTMIIDADSEVTFTEYANPTARNYVYYNTEE |
| Ga0209535_100048923 | F087212 | N/A | MPLNQELAKYYPKLLKLAEKITKGNKVDALDLVQDLYVIILEYDQEKIKKIVENGHLVFWSARVLMNQYVRTNSAFKTKYYTKLRTENYDVKNFQYFDGIEELVEFENKLQFVKDKMNNLHEYDKLLFEIYFSSGKSIRKLAKDTGISTTSIYTTLKNVKQYLKDEVESEYKEFER |
| Ga0209535_100048929 | F033812 | N/A | MEIGKQPTEQLLDFCFKTLNKALFEMSQNKAESDRKVLANILMNDLNEKFFRLTAEDVTQAFHKGVREGEQLAINPRTWFNWLNKQKMKTNKLRIEQSQDGERLLIESNAKNIDKEEVLKEFLELCVIEPFEEHCKGDEYTFQGINQAFQWLELNNFIVLTQKDKEQIWEEVQEEIVARKKFVHNKRKQFHPVIMCREKALRMHFGKWKKAKKNLRKEIYKILDNG |
| Ga0209535_100048938 | F039582 | N/A | MKVTVDTSDKTTVYTGGEYPVGHITQVVKQYVMKQELADNLLKNMKARIKELENDQRSQDLVYELKMQLHKVGAWYEPESVWADDYTGVPEVDMQLRHAPCEKLGRSGL |
| Ga0209535_10004894 | F008497 | N/A | MRGNVYLSLDTKTFKGLIPEELMKTYGIPQYDEEGVQNGLIKPTFKELGEYNRRKFGANPVVKIGKAKFHIIELEASWVSGELSALLDLGKGKEYPNNCLMTRTEAAKFIRDNSDDSII |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |