Scaffold Ga0208013

Basic Information
Taxon OID	3300025103 Open in IMG/M
Scaffold ID	Ga0208013_1002649 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025103 Open in IMG/M

Scaffold ID

Ga0208013_1002649 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7229
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

7229

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (18.18%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)	Depth (m)	45
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.51

Long. (^o)

-76.2

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F021393	Metagenome / Metatranscriptome	219	N
F064801	Metagenome / Metatranscriptome	128	Y
F087318	Metagenome	110	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208013_10026491	F064801	N/A	QPYMSTDTGAKLPIFPFPLIMIYELADNIDALRIPIETLNREMFKNGFEVVEKWKYKCNNCGKEFQYQPLKGDHTDDQPFEQNQNNESNTIPRNEAKKAIAHEINPTGEMECDTCGSNDLLRPVPENRKKLEDMLEKPINGNEQTLEDLSRQLERDLEVADNAYCLVLKNYKIDDVSGRIDHDASEVKELLRIDPPQVALIADSDGRIGYDDKRNQIFVCPRFEHRDKRLTVPKCDRCGAEALKAVLEVNSVYSIGIPQPKRVVYGEGEVIWKAGKYKPSLLYGYSPIYSIWSKAMSLSHMDEYIRKYFDKMRPPRGMLVIASRNYETFRKSWDTLEEKAIEDPYTIHPLLVESDKGSKNMAQWIDFTGSLKELEFTEIRRELRMIIGAVFGVLPLYFGELPSGWSQEGLQVTITNRAIKWGQDILYTSFFKKFAAMLDVDDWELRLKGGEENDKLRDLQIQGVEIQNMAAMQAMGFEVTKTHTGEFKVSKNPIINPTMMMLESNNESDKPNTSGSKGRGRGTAAPKEDQQEMDGKPKKQRPSDKGGVAQGSPSSGKGTSQSKKAEIQPYLQPKKFPDGITPANFEIVKSTLQSAIDFDWTKTKAVDELRNKAHMTVRQAREIVKQELSDTKRWEEDGF
Ga0208013_10026493	F001235	N/A	LATKLNVDDGGTDHGKKLWEKHQADEYTHVDHYKEAICINCFKRDASAATIADICGDCAGKRGREPLLATITHKMYGLCFFCGHYKFQIEQINARFCNTCHRRIANVTKEYNKKGGMLGADPFWQKMRKKHGKDWKIIMGRNLGNKR
Ga0208013_10026494	F087318	N/A	MGISVHVYDSIDEYVRRNGRLVSDKNEINDASISLHDIWVTGDNKLRIVLDCEKFYEHPDTSRSISCFQKNNIEKFRTGDERLVKYDDVSFDPKTENIQFFKKRLRKAPIFFKVGKFCGDLPNKTVKINWEYKFFNLKANRIDFILL
Ga0208013_10026499	F021393	N/A	MVNEENSNEQIEEVTTSNEVVKSDNEIVEKSFQESVKSGFDTLTEVVQSLAETQKSTLDTLGDLDTRLKAMETPTDLPLSPKGTAASEDVGAKVTVPDTYQSNSVQAGLDDDRSGDKKPASDKGGLKMQQKSDDTGLIEKSEHTFTTETPRPNAALEVVDKSFKDESMILKDARAGGAEGLAQVARNILAGKYYTPSEDEVGAY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208013_1002649

Overview

Ecosystem & Geography

Associated Families

Sequences