NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208013_1000296

Scaffold Ga0208013_1000296


Overview

Basic Information
Taxon OID3300025103 Open in IMG/M
Scaffold IDGa0208013_1000296 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30946
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080152Metagenome115N
F092734Metagenome107N
F098078Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0208013_100029612F080152GAGGMRLKGLLNEAKKDLDIHREYEAGDAFAVPREKGRVFIILHPYHAAQGVKKWTGIEFVLDGKYSYMASADVTTAGDEQAFKGYKKIKLTSKMKKQIQQVLKDPEEIDRINDSDTKLRDVERAIR
Ga0208013_100029626F098078AGGMFTTTQYWILPSGKVKKMRSGHEEYLTDKGISYGKAFTSGHIRLAVADDDGTPSAEWTKQATRPAKKALGSIVQKAEKRGGPGARLYYDFVDYNTGRIKYIKSGNTDYKGFLRLP
Ga0208013_100029641F092734GGAGMKLQHTIKEDIITEGGDELNFEDLDSKQQNRIKAAQKVIGGKREYIMESAHGLIVAFKDIRYDHSNKTIRLSGKDLAGLAKLKVRWFDVSPVQQTVAVGI
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