| Basic Information | |
|---|---|
| Taxon OID | 3300025099 Open in IMG/M |
| Scaffold ID | Ga0208669_1007969 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3080 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -16.21 | Long. (o) | -76.63 | Alt. (m) | Depth (m) | 30 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016596 | Metagenome / Metatranscriptome | 246 | Y |
| F018080 | Metagenome | 237 | Y |
| F052205 | Metagenome / Metatranscriptome | 143 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208669_10079694 | F052205 | GAG | MTDDWIDNILDGEPSGITDTQWLIIESNIDHTSLTTQMKSDILNRINDLSQLEAEEIITTLYNNRYEKDTQKQWLKMFKDGVFEDRDF |
| Ga0208669_10079695 | F018080 | N/A | MEYLKIEIFKHFLKTYTYIVWERKHILGFISEDDIMKLLDEKQVVDFYHFDKTVFKVEKFKVDKYLSKDD |
| Ga0208669_10079696 | F016596 | N/A | MTKKYSLDKIRKSRNEFEALLRIYGISNLQLCKIIEVNYATSSKFIAEPTRLRFIHAKRLADFIGLNIQDIVDTIVYDLN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |