NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208669_1006035

Scaffold Ga0208669_1006035


Overview

Basic Information
Taxon OID3300025099 Open in IMG/M
Scaffold IDGa0208669_1006035 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3666
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.63Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035973Metagenome / Metatranscriptome171Y
F056912Metagenome137Y
F072759Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0208669_10060351F072759N/AMENYLYFRKLRTVKSTHEQDGTQQAMTAAFPAADIGVAANNDNLNEIAAISVTSKDGGGTGHASVLFDPTTIVPTLAYSTDARAIATGSVHWIEPSSQAYANGILTLDVHGTAGGYTLDDDDIITVYWKTGLETAFMYPVSALKGMVATDTNTTTLHFASIVGSATDDVVTIEHGNAKFEDVCKMINDACNAYPRDGRLITVIDGADGIMNTLHAGNPAGITSIEYAPQGGAAGMAT
Ga0208669_10060352F035973N/AMREENYLYFANAGGNDTDKDMAMFPASTFRGAVTMSSTTTEFFFAPQDGTGTTANGVLLTHSDIASGSSETATMVIGDNNQHKLVMEEFAQLASGNRKNTTNFTVIRDLNTVPANEGAISATGISDVSAVAITID
Ga0208669_10060353F056912N/AMAIQMAVPSHGGETFVTLIKDANEKFCGPTSNFLGLKCDGAGSMKLRFEDIDGTAAATVIDVTTTDTVGTGVEMKRVCQAIAGAMAGYGVQGKFVKVADTLAGTYIHPDLLSVDAVA
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Institute for Fundamental Biomedical Research
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