NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208157_1000237

Scaffold Ga0208157_1000237


Overview

Basic Information
Taxon OID3300025086 Open in IMG/M
Scaffold IDGa0208157_1000237 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34164
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (92.98%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003073Metagenome / Metatranscriptome509Y
F017755Metagenome / Metatranscriptome239Y
F023756Metagenome / Metatranscriptome209Y
F031661Metagenome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0208157_100023730F003073AGGAGMAKKLENMTQDERIEYWHNVREKERINRRNRIAKLSMEQRAAVISVHNLLDTVLDTALHPDMGGIRAVTAFDLQELSEAMDTLQFQFNLKGE
Ga0208157_100023740F023756AGGAGVRTKHTMINPEFDHDWNDVSVFEKLPVRKTANPKRDDWKRDRKAARNAKRKIQEQSYA
Ga0208157_100023745F017755GAGGMARKFITPMGKHKPLGSSWRSMDSKAYSRSYEPETRPDFRVYVTGQADACLALYRKEKDKADALAILDSLL
Ga0208157_100023747F031661AGGAGMANSTKKSFAAQLAEANNTVQAKGLVLSRWDKSITRGDVNRFKALCAKDGFWFSLGEICLELLKQSGGKKTDSALLKDANLHTVAKQRRSEAMKFFENFHVIVENDLLGKKSTICHMKDLLKEVDKIVNPKVEKDPVQPEVETPVEPEVPAIEDKSSVEPKAPLSASDIALEALVQCELNGVSKAKFLAALKEQLEMLDDSTDKSVIKAAA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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