NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208791_1034812

Scaffold Ga0208791_1034812


Overview

Basic Information
Taxon OID3300025083 Open in IMG/M
Scaffold IDGa0208791_1034812 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)935
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.205Long. (o)-77.515Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026261Metagenome / Metatranscriptome198Y
F044950Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0208791_10348121F026261AGGAMPKYFGTTNNIIDWDPIVDICKKCTTGDVNTPVGVIDRSEADAEGTLLESYRGIMNTWLDAGYNLEEIKWVDYYPGEHFDIEIQNKFAEIVNAQPLRVFVSDVAPGNNVPYHWDVEDNEEEWLAQGELKRWVCFMDKPRWGSVLILEDEAFHNVEQGKIYEWDNYRSYHAGTSMGIHHQYLFHFLGRPNK
Ga0208791_10348122F044950N/AGSNIWPQGDWRQQIKEIILDQWDEGVYKLTMYPHCHYADSQGQMRAIDWYGCVPIDEPYIEEKYMQGIIHDTAQFRLEETGKAVDNVLNLETMFKRSLGTHVLWGNQDMSYIYKELFNA
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