NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208791_1025919

Scaffold Ga0208791_1025919


Overview

Basic Information
Taxon OID3300025083 Open in IMG/M
Scaffold IDGa0208791_1025919 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1142
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.205Long. (o)-77.515Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010277Metagenome306Y
F019561Metagenome229Y
F031295Metagenome183N

Sequences

Protein IDFamilyRBSSequence
Ga0208791_10259191F019561GGAGGMTDKFSKPILRNLRTSLQDILKAECFGDKIPFEYTLGNCSFDEDQAKFQLIVTFKGNSVEDIAKKKQKEDLEHYAKYFDIDLERKHPRYTLVGYKVKSRKLPWIITDNQKSGEYIISDDQAQKLFG
Ga0208791_10259193F031295AGGMVRAEEKLHGVISALTDEYNNYPHKRLKKSEVQNLVHDLEVVDAEFHDLKLPPITDDIKLDNKVCLFYIINELKDIITEPNVEDVEKRLTDFHNTLVFNLGINALHNHKNDWEDR
Ga0208791_10259194F010277N/ARMSRLKDKLLEVELFVGEKLQDLTNEQVIKEVRKHFGSQMFVDHAEELLHEFQQEVNLERLQSW
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