NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208791_1010206

Scaffold Ga0208791_1010206


Overview

Basic Information
Taxon OID3300025083 Open in IMG/M
Scaffold IDGa0208791_1010206 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2233
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.205Long. (o)-77.515Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003677Metagenome / Metatranscriptome474Y
F014069Metagenome / Metatranscriptome266N
F026154Metagenome / Metatranscriptome199Y
F089160Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0208791_10102061F089160N/ANFTGSIRLENILWWKKYFLKVIHLRVLYPKTGYIQIVKIYRDKKPSIRVVTIPSGSDKRELLVLNKIYGGNNG
Ga0208791_10102063F026154AGGAMNGIFTAIRFVTYTLGGLAIRKGWNWLTTDVDPIPFTKEFDEEYAQTKAKYIRLTKLKEEYEAYRKSRRTIS
Ga0208791_10102065F014069AGGAGGMETVKAPINERVATKVMPLTKWFVEQYFQTYELMSSDPRFKTLPPYNQTSCIATVIIATNNALDKSRDARKSAETLQDISKATEERKAVNE
Ga0208791_10102067F003677AGGMVDEALYFSEKDVGKKVYEIEYEATYVTKWQVLADNEAGAFDTWLAENKQDLVTEDGTNCVCSYVKDYTQLGKTQIIAEIKHNKEDDEVYADES
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