Scaffold Ga0208156_1000408

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208156_1000408

Scaffold Ga0208156_1000408

Overview

Basic Information
Taxon OID	3300025082 Open in IMG/M
Scaffold ID	Ga0208156_1000408 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	17433
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (58.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD12-C183	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-13.003	Long. (^o)	-80.809	Alt. (m)		Depth (m)	275
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F065211	Metagenome	128	Y
F089533	Metagenome	109	Y
F093730	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208156_100040813	F065211	GAG	MIIQETSGGELPPSKPQNAVCVAVIDVGESYGIAPDKSGRRMVPSTNPAKPLPKQKVRFIFESEEKKEDGTAFQLTSQFNVTLSDKGYLKPFLDSWAIELVRTDAGLDMEASCIGKCAKVNVKHDPGRIDPEQIWANISSIMPSDSDLKPTGEFNKAEYMKDTAEKYAERQRQRQSGSVP
Ga0208156_100040823	F089533	GGCGG	MEMSRSRKSPPVLTAATPPTAVEPTPRYTDSDRFDQPILHDVGPIDEELPPAPPAPARRDMVGKMFPRLSAAMDLFGKIDLSQIRQARGDAGRKKIDEAAGAALMDSVLLNQLSDLENRLSMDITPKNLPQVKRKLDERHLGGVLTPIDEESASQAILKRLQANRTKSDDPKVRKAEKRSELDDPANRKAIKEVATSLAAGATILAFDDVELKSLLPEFGLAEPSKKNREALQLLVDAYEAETGEVRTILQALVVLSHREMDEAFHDWMAD
Ga0208156_10004083	F093730	N/A	MTVYVRCENDGRWRLWVRSAAGESPAGVRLNRGGMFPYETLYDHQDHAQATYQAGRLQEYIDDRDRVLVANRKKKERWS

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