| Basic Information | |
|---|---|
| Taxon OID | 3300025075 Open in IMG/M |
| Scaffold ID | Ga0209615_101326 Open in IMG/M |
| Source Dataset Name | Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - 4B3 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1736 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Indian Creek, Illinois | |||||||
| Coordinates | Lat. (o) | 41.6655 | Long. (o) | -87.5437 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000957 | Metagenome / Metatranscriptome | 821 | Y |
| F005588 | Metagenome / Metatranscriptome | 395 | Y |
| F042864 | Metagenome | 157 | Y |
| F053888 | Metagenome | 140 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209615_1013261 | F042864 | N/A | MPTPTKPKATLVSDKAMVELLKRKVIAFREAANLKDKDGCVRGLGSYALYGISHTRGQLIVLASEPTAGDFNKYVTAKAKADVCALFDQVVEYRDAGSHSNPKVTILCWTLA |
| Ga0209615_1013262 | F053888 | N/A | MNQSSVSFIKGLDGRVLTLARPVLPHAARRLVSVIPQLNALNAAGKSQADAAEAMGVSVGCIRNWITLAGISWSNLNKRGPYKTNA |
| Ga0209615_1013263 | F005588 | N/A | MPDPLSHHTDMITIRPNSKPPFWWLFPWAYARTLHTSANALKAYADKADRDILHQKAVIANLQADIGMLRQRVADQNDAIIRGTAITPDAYPHE |
| Ga0209615_1013264 | F000957 | N/A | MSSFSHLEGMRNLLIEIYEVNERIMTGDICSAKSAIASTNVKKILAHYHEALHEDGAVKVSLQAYVAAGGWVGIQYSYELDGFEVAGSQVPRRV |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |