NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207896_1001064

Scaffold Ga0207896_1001064


Overview

Basic Information
Taxon OID3300025071 Open in IMG/M
Scaffold IDGa0207896_1001064 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-36 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5436
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001740Metagenome / Metatranscriptome643Y
F016831Metagenome / Metatranscriptome244Y
F034346Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0207896_100106415F034346N/AMKTIKLIATKAVEEKMLKIYAIIMTTSFFALWIPTMFMVIKELIQTFI
Ga0207896_100106417F001740N/AMYNPNSPSNWSWQKAFDEMDKYVNQTELTQQSINHVIGYPGEANGVFMSLSKSQQDDVYDILNQIL
Ga0207896_10010645F016831N/AMTLTEEKMIKIAKQKLGLEVTDSFDNGCDLYCYNESTVDGYDVWVLTHSLNDINVSENVYYYEGDLASAVMEEIQYNGGSETLLHMDSYIWDDLYMDDQMLEYFAEAVEDIIEDNDEEGYGLTKAEIQELYDEHGLGDEEIEETVS
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