NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1010723

Scaffold Ga0208667_1010723


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1010723 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2096
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031256Metagenome / Metatranscriptome183N
F039823Metagenome / Metatranscriptome163N
F040053Metagenome / Metatranscriptome162N
F041489Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0208667_10107234F039823AGGAGMSNKTINVSYWKQSTGRTGQCLTERGQKIFDTLQPIYEEVVGLPLSKEKMYDMSLTLSRATKDEEGFYIQNTASTAFMILVQDLTSMCRHIRKGKEYKSISFGVFKVSNLKDLAKSKLGRKRKVA
Ga0208667_10107236F031256AGGAGMTIPYWQIGLKIGSESGQVNVHSDALPDASWEYAIEHAMDTARAVHPTERIEFLYVKEYN
Ga0208667_10107237F040053AGGAGMKAYFINAKDELIVEVDCKDYHHKLELLNCRMIELYPRHINNNDIWVDEEGLLKQSNYFASIDMDLKESVASYVISGNAIVLSCDDEGNSTDVKDLTIEELKSRVTFHGKRFIESNGHSFTTREWEDA
Ga0208667_10107238F041489AGGAGMSILVADIKFYVVDDDGNEKLNKEGTHIQLYQLKRDRRFKALEYLTEDMDMDLLEEINE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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