NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1007835

Scaffold Ga0208667_1007835


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1007835 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2633
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001582Metagenome / Metatranscriptome668Y
F002716Metagenome / Metatranscriptome535Y
F004956Metagenome / Metatranscriptome417Y

Sequences

Protein IDFamilyRBSSequence
Ga0208667_10078351F004956AGGAGMKMISPDGKVSIIAHPSKVESLLNMGWKEEAVHSQDKIKSSSKKKSKDEVENGNT
Ga0208667_10078353F002716AGGAGMSQYRLETEEDMAGYLDPNSHGVAATYINNGTSTDINIILNNEYVEQEEGIGVEALEPIAYCRSIDIPSVAYGHLLNVSAIKDTDGNIIKAATNYTIVNIRPDRTGFIALELEEV
Ga0208667_10078354F001582GAGMAIESAADFTSYLDINTGHGVTATFFEVQSSLWDLRQGLIDTWFDIDSGDAYSVNIIIDQEYFNIEGGTVPVAGYQPRAILKSSDVPYISQEDRLVVDAITTNNGNILKPETTFLVKTVEPDNTGFVELVLEEQ
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