NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1001769

Scaffold Ga0208667_1001769


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1001769 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7530
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006322Metagenome / Metatranscriptome376Y
F010877Metagenome / Metatranscriptome298Y
F101002Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_10017691F010877N/AAKELLIALLSGTMPKGDTKSEMFKFYNSMVGKSKYFPKQENPKTACGSCIQRVKTSIWKWYHSDETAPSFSELTFTGRLGAHNIPLYKITDAK
Ga0208667_10017692F006322N/AMPSKRNSFGKVVSGRGSELTDLQSKFLEGIRDNGMDASGKIAKELGYTNYYRDRRTTGTAFHKALMEIANSELKSIEAAKGTNLTALIRIRDMAIANDDMKAAMDAIKIINDMQGYKAPVKVEQTKIDITATIDLTAPDEEQDYLDVDAD
Ga0208667_10017699F101002N/AMADLVFKQGIAAQYNAVALDKTSDNTLEEISPTGNYQARDVVKIVYTDVYEKAVYGVCTNPVRGEFTFDENIYPVGPSGITATIFKYNTTDVYETSIYRIGVDVENGLYSKAYNQYASNISYSLIIPVKRDTYFGGASTVITSSDVAFADLCDSKAYGVGLSDISLDTLNNKFKSSLEFNIATR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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