NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1001143

Scaffold Ga0208667_1001143


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1001143 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10142
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001582Metagenome / Metatranscriptome668Y
F002716Metagenome / Metatranscriptome535Y
F005495Metagenome / Metatranscriptome399Y
F028655Metagenome / Metatranscriptome191N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_10011432F005495N/AMKKYTILKDTVAGGQRVHAGDIVELPEHEGHALCGYGKAEIHVAKPKAKKEDRSVGLETSKVKAPKTRAKK
Ga0208667_10011433F001582GAGMPLESALDFNAYVDTTTGHGVTATFFEVQQTLWDSLGLIDDLFDIDSGASKNINIIIDQEYFNIEGGTVPVAGYQPRAIVKASDVPYISQEDKLTVDAITTDKGNVLKAETTFIVRTVEPDNTGLISLVLEEE
Ga0208667_10011434F002716GAGGMSQFRLETELDMAGYLDINYGHGVSAVYTNSGSSSTINIILNNEYVEQEEGIGVEALKPIAYCRTIDVPNIAFGNRLDVSAIKDTNGNILKAAQSYTVVNIQADRTGFSALMLEEI
Ga0208667_10011438F028655N/AMKLIDKAKAHFDSLEIKEIEIPEWSDGDEVLKVYAKPLTLAEMSKLQRYAKDDDVALMAYCLIYKALDSDGEKVFDLSDKHTLMNGVDKDVLARVATEIMSTPSVEQQAKK
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