NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208667_1000776

Scaffold Ga0208667_1000776


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1000776 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12863
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (89.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000256Metagenome / Metatranscriptome1448Y
F004952Metagenome417Y
F009460Metagenome / Metatranscriptome317N
F020173Metagenome225N
F027482Metagenome194N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100077613F009460AGGAGMAKWDLSKLENSASVGAHIDEDSSTPTQPTPLMLVMSIRRKADIMRMDAGRGPERRTMKQRAEEIMALCEMLEKRL
Ga0208667_100077617F020173GGAMICATCDGTGFIELPRFVDTPDSDAWTTVRCPECQDEDDFDWRNEEEEE
Ga0208667_100077618F004952AGGAGMNLTHTHEFLITHITDSGTGFGVRTDNGESVHISPRLLQQAHANLDDICIGIIVQNAVEDQRERTPWVAAYVQERRAARDVLGLATDVPAEAVQAPIEEPKQVDWAAVQRKIIAMLQSADVTYCETADIADVVGVEPRKLSQHLENMHSRGEICRAHVNQRANQQRATLVLWSINADVYK
Ga0208667_100077625F027482AGGMDKKGLEKWLDRMFAEGKAVTYPCGHFSGRVMLRSFDEKLASCSTLAELEGFANRRRFDPSLPRWTAAERAEILKRKIKLEKGKRK
Ga0208667_10007766F000256N/AMADGVSGIGSAPFNVQSDIHQQTQSRERIETHLAEQRVSKEHRANHTHLDALREQKLDLGNGYDKFGTKTNADRPQGTNINIEV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.