NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1000644

Scaffold Ga0208667_1000644


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1000644 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14448
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005495Metagenome / Metatranscriptome399Y
F028655Metagenome / Metatranscriptome191N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100064411F005495N/AMLKWNGGSNTPNLNMKKYKILIDTMAGGSKVHAGDIVELPEHEGHALCGYGKAEVHTAKPKAKKEDRSVGLETSKVKAPKTRAKK
Ga0208667_10006445F028655N/AMKLIEKAKAHFDSLEIKEIQIPEWSDGDEVLKVYAKPLTLAEMSKLQRYAKDDDVALMAYCLIYKALDSDGEKVFDLSDKHTLMNGVDKDVLARVATEIMSSPSVEEQAKK

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