NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208300_102374

Scaffold Ga0208300_102374


Overview

Basic Information
Taxon OID3300025061 Open in IMG/M
Scaffold IDGa0208300_102374 Open in IMG/M
Source Dataset NameMarine viral communities from Cariaco Basin, Caribbean Sea - 23_WHOI_OMZ (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5334
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameCaribbean Sea: Cariaco Basin
CoordinatesLat. (o)10.847Long. (o)-65.114Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039681Metagenome163Y
F044724Metagenome154N
F052647Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0208300_1023741F044724N/AETYLTKCIIESNSINLLPKVFQVPAIMGGLGTFTNSLTPMLDAVECNTPLQLGATQQFRIYGQNFIANTVANRLGLGLHYSESVTNMKEKFYDMPTNETNTGTTATTVSGENLTINDGVFLEDIYPTVVSGVVTASQSYIGYMSVTSNDFGNSMPLNVPVQPISTALGTTTSVGMAKQPHFTNIHMPMKSSCLISHSYVQDEALTATGNFTITYGYTKA
Ga0208300_1023742F039681AGGAGMSTYEIGNPTKLRIKPVYDTGSYGHDLSLPLLLAQSTNLATLTPSTSSFHQTEHDSALPIDEVLSFISDSDKCELLHNGNDTDFDKTWLIQPDMTAWSYKIALNMGIGLKVSAYTSGNITVDNIHLTITEVGDGAGDIVIADLRIPTGASALSATGEQIIMFHADIMNKIRFNNNKPIKVRLQTESTKSGTATYQVGILPVYPMIPTAVPKEWLLSQVEIHLHASLDHAFPIWRDSDNDQRLDYSGCSPDGCNSALGEMGTV
Ga0208300_1023743F052647GGAMEILDFMPLIYVSVGLTATYFIGKLILGHMTQLKKVKRGIEVQKEKKSFENGLEDLLDNAPDMYVKVLQELEHLKANGADEKQMSSLQRKADLLKIAVENQEIINLAGKPLFRVLGKFVGNIGR
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