NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207905_1004109

Scaffold Ga0207905_1004109


Overview

Basic Information
Taxon OID3300025048 Open in IMG/M
Scaffold IDGa0207905_1004109 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2829
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0003Long. (o)-144.9998Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026158Metagenome199Y
F047368Metagenome150N
F050008Metagenome146N
F052258Metagenome143Y
F063169Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0207905_10041091F047368AGGAGMPNECGSIKHAHTADEALKYLAVGNKSKGYKLKRSGVSIIILNIEEIKDT
Ga0207905_10041092F026158N/AMEGFKDKIEMLMKAGDILDHCTRGRSTEKEASKARARSLKIWKDTGCPISQAAELGGASRTNFHKWLIREGHHTPKSK
Ga0207905_10041093F052258N/AMKKTKQIESERKLVNSEREAEAAMILFACILGGVILILLAIAMG
Ga0207905_10041095F050008AGGMSLVNMNETQRELVLDLAEDFAPFVKKIESGMALTRNHYGAYGSMISKLSKGNRKLALVFSYALMMAGANGQGVSDAMGAFFPE
Ga0207905_10041098F063169GGAGMQRELIEDILKYLDKFEKTGDWFHFSLALDALDDLKKQIESI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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