NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207905_1002717

Scaffold Ga0207905_1002717


Overview

Basic Information
Taxon OID3300025048 Open in IMG/M
Scaffold IDGa0207905_1002717 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3606
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0003Long. (o)-144.9998Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026158Metagenome199Y
F037475Metagenome168Y
F047368Metagenome150N
F052258Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0207905_10027173F037475N/AMKAIETKYLSATDTRGERIKATAGKLTATVPYDYALSDQSEIAFEAVKELVRKHKLDWDISKMVYGGTDKGYTFCFPESTIEA
Ga0207905_10027177F052258N/AMKKTKEQIANEHKLVNSEREEEAAMVLFACILGGVILIVLAIAIG
Ga0207905_10027178F026158AGAAGGMLHISSTSESKASAVQCIEGFRDKMEMLMKAGDILDHCTGGRSTRQETADARARSLKIWKETGCNLSEAAEQGGADRGSFRIWLIKEGYHAARPYCKK
Ga0207905_10027179F047368AGGAMPNQCGAIKHAHTEDEALKHLAVGNKKKGYKLKRSGVSIIILNIEEIKDT
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