NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207905_1002429

Scaffold Ga0207905_1002429


Overview

Basic Information
Taxon OID3300025048 Open in IMG/M
Scaffold IDGa0207905_1002429 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3836
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0003Long. (o)-144.9998Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008453Metagenome333Y
F009699Metagenome / Metatranscriptome314Y
F019909Metagenome / Metatranscriptome227Y
F020259Metagenome225N

Sequences

Protein IDFamilyRBSSequence
Ga0207905_100242910F008453N/AMSNYAVYRVYKDWNKRPKTLMDGLTREQAQTIVRNTPSNDDSMVVFDEEPRDKQWGRKQ
Ga0207905_10024292F009699N/AMMTEKQALAFMQKVDSSAPFWKELHDENRPTMNIQGTPTPRCLYNLMITRRDVNLYAKIDMKPHRLWKISDVKAYFGLKGGKQKIADAINAIHDELIGRLENQDDEQ
Ga0207905_10024294F020259N/AMMTEKTFTAVADWAERIQMMTQDNNLINAQDIVHDVFGMLRDDEHFLPRL
Ga0207905_10024296F019909N/AMMTNFEQHIGEALPQPILDHIDAHTTEELMRQAEKLKFESWCPVAMENDSPELRKELKEASELLFKYIDFQLVTDEIWNSEN
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