| Basic Information | |
|---|---|
| Taxon OID | 3300025048 Open in IMG/M |
| Scaffold ID | Ga0207905_1001122 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5844 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (40.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 50.0003 | Long. (o) | -144.9998 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026158 | Metagenome | 199 | Y |
| F047368 | Metagenome | 150 | N |
| F050008 | Metagenome | 146 | N |
| F063169 | Metagenome | 130 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207905_100112212 | F050008 | AGG | MSQVNMNETQRELVLDLAEDFAPFVKKVESGMALTRNHYGAYGSMISKLSKGNRKLALVFSYALMMAGANGQGVSDAMGAFFPE |
| Ga0207905_100112214 | F063169 | AGG | MQSELIDEVLRHLDKFEKTGDWFHFSLALDALDDLKREIES |
| Ga0207905_10011228 | F047368 | AGGAG | MPNECGAIKHAHTAGEALKYLVVGNKKKGYKLKRSGVSIMVLNIEEIKDT |
| Ga0207905_10011229 | F026158 | N/A | MEGFKDKIEMLMRAGDILDHCKRGRSTEKEAREARARSLKIWKDTGCPISQAAELGGASRTNFHKWLIREGHHTPKSK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |