NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208435_107644

Scaffold Ga0208435_107644


Overview

Basic Information
Taxon OID3300025037 Open in IMG/M
Scaffold IDGa0208435_107644 Open in IMG/M
Source Dataset NameMarine viral communities from Cariaco Basin, Caribbean Sea - 24_WHOI_OMZ (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1502
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameCaribbean Sea: Cariaco Basin
CoordinatesLat. (o)10.847Long. (o)-65.114Alt. (m)Depth (m)237
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039681Metagenome163Y
F044724Metagenome154N

Sequences

Protein IDFamilyRBSSequence
Ga0208435_1076441F039681AGGAGMSTSTGFEIGDPTKLRIKPTYNVGDYGHDVSFPLLLSQATNLVTLTPSTSSFHQTQHDSANPIDEVLSFISESDKCELLHNGNDTDFDKTWLIQPDMSFFSYKIALSFGIGLKVSAYTSGNITAESIRLTLTELGDGVGDIVIADLTIPTGASALSATGEQIIMFHADIMNKIRFNNNKPIKVRLQTESTKSGTATYQVGILPVYPMIPTAVPKEWLLSQVEIHLHASLDHAFPIWRDSDNDQRLDYSGCSPDGCNSALGEMGT
Ga0208435_1076442F044724N/APFMASTSSLTAGQSYLTKCIIESNSINLLPKVFQVPPILGGLGVFTNSLTPMLDAVECNTPLQLGATQQFRIYGQNFIANTVANRLGLGLHYSESVTNMKEKFYDMPTNETNTGTAATSVAGENVTINDGVFLEDIMPTVVSGVVTLSESYIGYMSVTSNDFGNSMPLNVPVQPISTALGTTTSVGMAKQPHYTNIHMPMKSSCLISHSYVQDEALTATGNFTITYGYTKS
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Institute for Fundamental Biomedical Research
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