NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209986_10231504

Scaffold Ga0209986_10231504


Overview

Basic Information
Taxon OID3300024433 Open in IMG/M
Scaffold IDGa0209986_10231504 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)906
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameAtlantic Ocean: Black Sea
CoordinatesLat. (o)44.288Long. (o)34.983Alt. (m)Depth (m)2075
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001139Metagenome / Metatranscriptome767Y
F025274Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0209986_102315042F001139AGGAGGMRIKHNDLAWYFIRPHDQLPDAYLRSCKKFFKELSLKQQATSGKPQALIQKNLHKPGTRVKNRFNRKV
Ga0209986_102315043F025274AGGAMEEKTIDTYSMLGKPIKNTKQQWVDRWKDCTVSSLAGLMPIGEYRDLVDRIITLAGEDFDRRVK

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