NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209986_10135084

Scaffold Ga0209986_10135084


Overview

Basic Information
Taxon OID3300024433 Open in IMG/M
Scaffold IDGa0209986_10135084 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1295
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameAtlantic Ocean: Black Sea
CoordinatesLat. (o)44.288Long. (o)34.983Alt. (m)Depth (m)2075
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000930Metagenome / Metatranscriptome830Y
F007721Metagenome / Metatranscriptome346N

Sequences

Protein IDFamilyRBSSequence
Ga0209986_101350841F007721AGGAMKPIRSNELEFFKELIRDKFHDKQEQINSEIHFEADKLAEKTKSTFAKECGVDKDLKQLTKVNDEYLNFIRTKRIVEEKLLDKVNQMANAISNRLERLAKARQWDTGFSSFNAKEDGVEYFTNKLDEVCYQEAKEHIKKGHKLYHALKEKRDNCKVIVHTGSDINSTVKTLQKEM
Ga0209986_101350842F000930AGGAMYKVIRWQTDGTEEVWTAPKKPTLEELYKLIGCSTIERQSGYDKNISKKTFDMWMDEESKMKAPEFIKKNVRATNAWFRWIEKTNRMCIPGDFIAGNTVIYKKA
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