NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244776_10240012

Scaffold Ga0244776_10240012


Overview

Basic Information
Taxon OID3300024348 Open in IMG/M
Scaffold IDGa0244776_10240012 Open in IMG/M
Source Dataset Name0.2um to 3um size fraction coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1266
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001019Metagenome / Metatranscriptome804Y
F001781Metagenome / Metatranscriptome635Y
F009685Metagenome / Metatranscriptome314Y
F034924Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0244776_102400122F001781GGAGMKPEDKDKLNECLAILDKTDLGLSLVWLWTWSTINNILEDETYKANVTKDDMWGHLCEAVEAGMGFSLEYGAEQHHEDVQDWMLSRDYIVDTMFEEEEEEDADE
Ga0244776_102400123F009685AGGAGGMQMSDEYLNERLNTAQKLLWGGSETENIAAHNIISKLIQDRMVEDEGQYDSL
Ga0244776_102400124F001019GAGGMTHYEPSLEILEVEYSCSPGGIDLFEVYDKTDIPLSVPIYETESLTNAVLFCYNLGKDFTVRTLAEWNERELSYASV
Ga0244776_102400125F034924GGAGMPLYRVFGTKYTNYYTIVSAADEYQAAEIANLRPSSDWDAIATDDVIEATDVFLDEDNEIDLQLNI
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