NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244776_10090110

Scaffold Ga0244776_10090110


Overview

Basic Information
Taxon OID3300024348 Open in IMG/M
Scaffold IDGa0244776_10090110 Open in IMG/M
Source Dataset Name0.2um to 3um size fraction coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2312
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F007644Metagenome / Metatranscriptome347Y
F023344Metagenome / Metatranscriptome210Y
F038241Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0244776_1009011010F000311GAGMYFELTAPNRLSMEMAYWDAQITGLDPQAMDSLTFNIGTGSIEKVSRLRDKFNLKETYVSDYEPTGYQRS
Ga0244776_100901102F007644AGGAMTKSSYFLEYMKLHLISLEQDLEENPASIHVVDIEGQIYATRHLLSVATDIMNSTNERYNNDNI
Ga0244776_100901104F038241GGAGGMLGYTKTDLDEMINSVHDAKLFYIRNSDVEQVDQDPLVEGLLKANDFLQGLWAEGYFD
Ga0244776_100901106F023344AGGAGMEAFTDTVGEHILGAIQVDIEQHLFEQWNNANLDEGSAFAEYKFMQFAPDNLKQSYNEYYGYIEGDEFLL
Ga0244776_100901107F000450AGGCGGMGDRANFVFVDSKGQSIVLYGHWAGHNMLSNLADAVIAARPRWTDESYATRIAISQLVGDQWNMETGWGLQVNSISDNEHKIPVIDFNQQTFSLHEQDDWANVQNKVRGMKNEAIFTQDLTSFCEKYADKLVSV
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