NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244776_10026611

Scaffold Ga0244776_10026611


Overview

Basic Information
Taxon OID3300024348 Open in IMG/M
Scaffold IDGa0244776_10026611 Open in IMG/M
Source Dataset Name0.2um to 3um size fraction coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4702
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000714Metagenome / Metatranscriptome924Y
F001125Metagenome / Metatranscriptome769Y
F063705Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0244776_1002661112F063705AGAAGGMTKSSVFIEYMKLHLISLNQDWEDSKNSVPLNEHEYDPSDDYYVGATEAVEHLLSVATDIMNDNERIY
Ga0244776_100266113F000714GAGGMETETPAVTVPDTYNANLLVTYKVIHGYSDATYETDKVASIEWSLHNGRQSQKQANMYVSKISTVKDIITEAYADSDDQETLRSIAEALDIELTRTVEWSATIEVSGTIELDLLADYDTDVESEIYENLSVDSQNGNIEVVDQEVTNVREN
Ga0244776_100266114F000311GAGMYFELTAPDRLSMERAYWDAQIIGLDPTALSPLTFNIGTGSIEKVSKIRDKYNLTESYISDYEPTGYTGR
Ga0244776_100266117F001125AGGCGGMGDRANFGFKQSNDNTIFLYGHWAGHGMLERLANAVEAARPRWTDESYATRICVSRIVGEDWKAETGWGLSVNRILDNEHKIPVIDWAEQTFTLMEEDLQTVVFSLSLDKFCTKYSQLVM
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