NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244776_10016591

Scaffold Ga0244776_10016591


Overview

Basic Information
Taxon OID3300024348 Open in IMG/M
Scaffold IDGa0244776_10016591 Open in IMG/M
Source Dataset Name0.2um to 3um size fraction coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6177
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F002060Metagenome / Metatranscriptome597Y
F008814Metagenome / Metatranscriptome327Y

Sequences

Protein IDFamilyRBSSequence
Ga0244776_1001659110F002060N/AMEINYISVVMAISAALVSGMGTALVAGFRENKKEKVRRVERDQDLLKMDLKDLKIELYKIEKELNEWKDKYYNAIQELIGIKAELEATMIELAHFEHHSDELDR
Ga0244776_1001659115F008814N/ALAEDKTTVLEGIIQDIGRELYQKWYNALAIEDRTEDTSKVMLANANETAFWAIQEFMNRFNAAAEALKDK
Ga0244776_100165918F000473AGGMEFINKDKDHFKYGINQWTGEPNKPVFYNKEMALAVRGIKKPVVNLQMDIVKYPEFLCLRLYEDNFIQYTGNNKEMVIDYLQKVKKLIESYGVRCELEGVPSQKVIRQGL
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