| Basic Information | |
|---|---|
| Taxon OID | 3300024348 Open in IMG/M |
| Scaffold ID | Ga0244776_10001136 Open in IMG/M |
| Source Dataset Name | 0.2um to 3um size fraction coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29084 |
| Total Scaffold Genes | 59 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 44 (74.58%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Columbia River Estuary, USA | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000376 | Metagenome / Metatranscriptome | 1216 | Y |
| F000671 | Metagenome / Metatranscriptome | 945 | Y |
| F008814 | Metagenome / Metatranscriptome | 327 | Y |
| F011394 | Metagenome / Metatranscriptome | 291 | Y |
| F021988 | Metagenome / Metatranscriptome | 216 | Y |
| F040629 | Metagenome / Metatranscriptome | 161 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244776_1000113618 | F008814 | AGGA | LQQLKPHGWQNLMAEITVLDGIIKDLGQELYQKWYNGLAQEDRTPEASEAMAKNAGETTFWIIQNFMIRFNEAAEALKDK |
| Ga0244776_1000113624 | F000671 | GAGG | MEKILCYSCNKSKANLNLKRSALLPINLLMCETCITSKFEPRWTIILSGRQYGHEVVKEYIAKKKYVGEDIKASELLV |
| Ga0244776_1000113626 | F011394 | GGA | MANFINKDKDHFKYGINEWTGEANKPVFYTKEMAQKVRELKSPAHDLQMDIVKYPEFLAIRLYENNFSQYDGSMRMRVIDYIEMVKKILESYGVRVELEGKPGGRTR |
| Ga0244776_1000113630 | F040629 | AGTAG | MDKYSIKLEVLAEVDAFSEADAREYISDIFNVDDEIKAVKVIKISKNS |
| Ga0244776_1000113646 | F000376 | GGAG | MSEYQERAKECKCCTKHVPLPTTLKAYNEIILCPTTHYNVIEYKRMWDSYGSRPPGSIRKHFSEYVQSIVEEKNQGDNKNASN |
| Ga0244776_100011368 | F021988 | AGG | MSNFQKEDGTGTTPPPNGAAAGAVTSREATRKAPRQGLKIDTNKHGIRREISTSPRPPKKTGRKKI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |