| Basic Information | |
|---|---|
| Taxon OID | 3300024347 Open in IMG/M |
| Scaffold ID | Ga0179591_1041382 Open in IMG/M |
| Source Dataset Name | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1828 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 39.7291 | Long. (o) | -123.6419 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000428 | Metagenome / Metatranscriptome | 1150 | Y |
| F009497 | Metagenome / Metatranscriptome | 317 | Y |
| F012136 | Metagenome / Metatranscriptome | 283 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0179591_10413821 | F012136 | GAG | MTKITLLTLVAAAIISAEGASAQGVYLDFGNNPGPRYRDYDDGPRYRDRGRYREERYGDRGDRGDRGYYRPGGYKTFNGCQNGWTVQDGLCKPYRGY |
| Ga0179591_10413822 | F009497 | GAG | MTWLYVLLEPAQTGNRLALLIAGLRVIGILAFALLTGYFVIQDAYLEATISIVTVLAWIAATTEAMDLVLERYS |
| Ga0179591_10413823 | F000428 | AGGAGG | MRLDDHFGSSSTVQRNERVKLAASFWNNVGAGMVIGGMAGAFFLDKPPGAWTKVGIAVAGLVLGWICYSIASNILTYLHTASDERR |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |