NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10830591

Scaffold Ga0244775_10830591


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10830591 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)737
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F001460Metagenome / Metatranscriptome690Y
F007468Metagenome / Metatranscriptome350Y
F033037Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_108305911F033037GGAGMKPADKDKLNECLKILDTTDLGLSLVWLWTWSTINNIFEDETYKQN
Ga0244775_108305912F000263AGGMETLYADNELPSHLQRLVDAGVNGLDIMHGELKNLMLIAEEQLSWAVDIEKETEEAMDSMARTEAEGRLDALVELYKLTYDLSFAIGARNEASR
Ga0244775_108305913F007468GGAGGLTTPTKSSKFIEYMKIHLISLNQDVEEDYSNETKIHLDGQIVATRHLLSVATDIMNENER
Ga0244775_108305914F001460N/ALNRMINAIHDSKLFYLRYPSDLMDKEPLRKDLEDAVSFMQGLWAEGYFDHTD
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