NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10441374

Scaffold Ga0244775_10441374


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10441374 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1067
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F001019Metagenome / Metatranscriptome804Y
F001460Metagenome / Metatranscriptome690Y
F037727Metagenome / Metatranscriptome167Y
F059952Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_104413741F001019AGGAMSTYEPSLEIVEVEYSCSPGGIDLFEVYDKSDIPLSVPIYETEKLTEAVLFCYNLGKDFTVRTLAEWNERELAYVN
Ga0244775_104413742F000263GGAMTPEDIGLLPHLQRMVNYNVSGLDIMHGELKNLMLIAEQRLADAIEVEEESEEAMDSMERTRCEGALDTLVDIYNLTYQLSFAIGVRSENLKDGH
Ga0244775_104413743F037727GAGMKIHRISLIQDNENEIQDTNDPDWNFLQGQIVATEHLLSVATDIMNDDIQGKGY
Ga0244775_104413744F001460GAGGMLGYTESDLNKMINAIHDSKLFYLRYPSDLMDKTELRTDLEMAVSFLQGLWAEGYFDHTN
Ga0244775_104413745F059952N/ALLEDWINSNLDEGQYYADKQFAEMSGDKFIQDEFNKFYDIKEGDEDYLC
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Institute for Fundamental Biomedical Research
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