NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10276405

Scaffold Ga0244775_10276405


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10276405 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1396
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080977Metagenome114N
F099280Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_102764052F099280GAGGMPEPEPEMGMDLPEDMSGIASPMAEEGAVTISVAKSKFDELHGIAMQLAGIIDALAADVEGQKAMTESLEGQVPAAENAAMASEEDFLNSIASEGSMR
Ga0244775_102764053F080977N/AMFVDQIFEECAEILGTTDEKRVYRKITQAVQTLMESGHWLQSTADVDVCTGWDGHTIALPRGIDVPLAVNVDGSPVYFRNRLFQYHVNKGGKFNTVEWAWDDRGYVATLMEIVKPSQLVAVAESENDVGKIIRLTGTDANNRDLRSQLKDGTGVDGLLIPIHSQSDFAYGTITSDDVTIRTREVAISPINKFASATPHTLDSGQGMAVTAISGTIPVPLSNGKTYYIGVLDALTIQIHTDSLNAQEGNYPISLQSIVGAGPLKFLDSRTSFVVTALQFASAPTM
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