NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10214611

Scaffold Ga0244775_10214611


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10214611 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1611
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001338Metagenome / Metatranscriptome719Y
F002413Metagenome / Metatranscriptome561Y
F004790Metagenome / Metatranscriptome423Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_102146111F001338N/AGTYRLKLIKPKFEKVKVWEDGTCSARLFFVDDKGFCLSKNFSSKYGKALAMLVGKYSGKFTEEIRLDATAAEYLQYLEPACGQTILVGVECEANGEYNGRPQFKYKMTYPKGSQKPTVADTLPDAPPF
Ga0244775_102146112F002413N/AMTETPPPMAAPTLVLISGFARAGKDTLASGLLEWSTRPAEHINFADALKEAGNHFMEYLGLDGNFMAEDFKCENRDALVAMGRFARRLDKDVFARHFANWCPVMKHHDQVSPETVVCSDWRYINELRVCQDILWEKGWKVRTVYVSTAGIGPANDEELDSIAEIRALHSFDQEYIFKPNGRQQIMSEGRILAKAWRL
Ga0244775_102146113F004790N/AMEALTLETVAWARKVGLSPDRVAFLLACPKYTVSKGHRKSDRVITDNPNHHLQRLGDCYWFRLRRRGTDIVENIGHDLLTARKRRDEMLAAFDSGQPIPHLNTK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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