NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10192077

Scaffold Ga0244775_10192077


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10192077 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1715
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006895Metagenome / Metatranscriptome362Y
F021769Metagenome / Metatranscriptome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_101920771F006895N/ANWVNKFSSGDIKVSVPFYYSMTGDDRFLLDSFSDDVVSGNRYVELNTDKIPRGHLTLTSFDIRSDEFANPNVWLRMVIEKDDEIRKMLTKVRAVPVSVKYSLSILLSSEIDVFKCSQAIMDTLWVYRFMYFEHNFMNIDAVMLIPDTNQVEIQRGKNLTSDNTIKLTVDFEVQTYYPAYRKDPDPIIYPKRTKWYLQMHTGRSNKSNKPVTDDSKLNKSK
Ga0244775_101920772F021769N/AMKNLKMELFNFRKSLTVDQMEVSTILEGHMNACNELSEKVVINSLNEKLKPFTYDKQVKGLLESLTDDMSQYQLLYELKHLYNVLDSRNQGELYRQPINVLLQTINLDTDQDRMSKILNELAVYDWVPEIKLFVHNLTKNPEQKTNLLSGGNAESIYTIVEQVEDGYLCMVRDSWFLLTNDNIEKTLLESHVNDPEKLKTLRNLEIGMRFASLSDEKINFRISENLTIGLSVNKKGVIFINDDEMNKETTLESLFSSPIIPIVNKNFYPVLLETSHNLNKFVEMDVIKRVSNLVNPHLEVYAFNYKNAIYLYRC
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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