NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10120791

Scaffold Ga0244775_10120791


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10120791 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2220
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005531Metagenome / Metatranscriptome397Y
F009143Metagenome / Metatranscriptome322Y
F029439Metagenome / Metatranscriptome188Y
F074868Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_101207911F029439AGGMTNIVLEPSHPMASSNTGDSRLFRNSVGNYISRKAYLELLASKKGLVSHRYLSPNESAWLMGVR
Ga0244775_101207912F005531AGAAGMTITYTLWQGSQLLAVNQKASKPEEILAVIEELNKLGKGFTYNIREVEVK
Ga0244775_101207913F009143GAGGMMTKWDTIQADVADAYVYVDEEEAYNKALEEGAISLIDVDDFDEYELSKSLTLDWDN
Ga0244775_101207915F074868AGGTGGMTTLNKTNIGLALGISGALENRILHDWNNGGAKSTYGLSVYQRKALLRILISESPKCFCVNCLEVK
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