NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10114013

Scaffold Ga0244775_10114013


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10114013 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2293
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013759Metagenome / Metatranscriptome268Y
F019136Metagenome / Metatranscriptome231Y
F031867Metagenome181N
F074879Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_101140133F031867N/AMQRTIEMIVKSKIELSADSLLQTKPTRVETHKEQNYLVYEFDNKEL
Ga0244775_101140134F019136N/AMSLTIKNYKKLESWSHNYKEFMIGEVIETETEYSFRVGYNGLPYTIKIFRTKLITNEYEMVLRDGADITQFGREWIAGRKLKSLELTALIFEALIVKCKPKAQQTTGNTNYSNGPF
Ga0244775_101140135F013759N/AMRVEFGMSVFSKRETLLGLEITTHNGITASEDALYNERIVEFSIGICFAIFTIGFVSKGEKIDTPEMDNVQRAMKAFESEMDK
Ga0244775_101140137F074879N/AMNVSIHDIKDIERETDIQLTNEQRDTVLNEYNTIIGDRAEGWDELIKLLIIKQATIQILKDKNK
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