NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10063618

Scaffold Ga0244775_10063618


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10063618 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3178
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009699Metagenome / Metatranscriptome314Y
F019909Metagenome / Metatranscriptome227Y
F020259Metagenome225N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100636185F019909N/AMTNFEQHIGEALPQATLAHLNDSPIDMLDKQARKLEFDSWCPVSMEGDSPELRDNLKKASELLFKWIDFQSVTK
Ga0244775_100636186F020259N/AMNEQVMTSFIEWAERVEKLTQENSLINSRDILHDVFGMLQNDEHFLPRL
Ga0244775_100636187F009699N/AMMTDKQALAFMQKVDSSAPFWKELHDENRPTMNIQGTPTPRCLYNLMITRRDVNLYAKIGMKPHRLWKIGDVKAYFGLKGGKQKIADAINAIHDELIGRLENQDDE
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Institute for Fundamental Biomedical Research
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