NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10057928

Scaffold Ga0244775_10057928


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10057928 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3353
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F002060Metagenome / Metatranscriptome597Y
F073544Metagenome / Metatranscriptome120Y
F084138Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100579281F000473N/AEWTGEPNKPVFYTQEMAKAIRQISKPSGNLLMDIVRYPDFLVIRLYEDNFIQFEGIKKEMVIDYISKVKRLIESYGVRCELEGVPSEKILRNN
Ga0244775_100579282F073544AGAAGGVKRYYETISIVFIHKDRLFGSAEKLGIYATVVKYQKDGIEYEETLENEEFSVMNEIVFDHIEESD
Ga0244775_100579284F002060N/AMHLSTNSTVIAIIAALLSGMGTAIIAAMSQAKKEKIRQHEREQDHLKLEIKDLKIELYQFEKDLTEWKDKYYIAIEDLILIKAELENALTLLNRHELFDALDT
Ga0244775_100579289F084138N/AMADLTVLDEIIQQVSAELYQKWYNAPTDLEKTNEWSEVMAKNAGETTFFVIQSFMNKFNAAAEELKDL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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