NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10047699

Scaffold Ga0244775_10047699


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10047699 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3742
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000852Metagenome / Metatranscriptome860Y
F001460Metagenome / Metatranscriptome690Y
F001781Metagenome / Metatranscriptome635Y
F002387Metagenome / Metatranscriptome565Y
F009685Metagenome / Metatranscriptome314Y
F033433Metagenome / Metatranscriptome177Y
F063705Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1004769910F001460GAGGMLGYDEIDLNRMIDAIHDAKLFYLRSPSDLIDKEPLVKDLQDAVSFLQGLWAEGYFD
Ga0244775_1004769911F002387AGGCGGMASFLEDVNQMVLDAVMVDIGAQLFDEWMNANLDEGQYYADKRFAEMSGDEFIMNEFNKFYELKEEDEDYQC
Ga0244775_100476993F000852GGAMTTKREYLKQQGITVGARGRFSGAAKTAIQEALNKGVTFTSEKPVQKAK
Ga0244775_100476994F009685GAGGMKMSDEYINERLNTAQKLLWGGSETENIAAHNIISKLIKDRMQHSQPGAELPGYDHN
Ga0244775_100476995F001781GAGMKPQDKEKLNACLEILDSTDLGLSMVWLWTWSTIKNFMGDETFIMKCSEQDMWDHLCEAVEAGHGFSLEYGAEQHHDDVMEWMLNRDYMVDSMFEEDEDEDEDE
Ga0244775_100476996F033433AGGAMYNKPSLEIVEVNYSVSPGGIDEFEVYSLDERDSFDPPIFSTTSLHEAVQYCYDLGKDFIVRTFAEWEARELA
Ga0244775_100476997F000263AGGMNQEDIGLPPHLQRMVNAGVTGLDIMHGELKNLMLIAEQDLASALEQEELSEEAMDSMVRTECEGRLDMLVELYNLTYQLSFAIAERNNQNV
Ga0244775_100476998F063705GAGGMTKSSHFLEYIRLHKISLEQDWDAAKNNLPLNEDEYDPSDDYFEGAIAATEHLLSVATDIMNSTNERYE
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