NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10047115

Scaffold Ga0244775_10047115


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10047115 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3768
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030758Metagenome / Metatranscriptome184Y
F043932Metagenome / Metatranscriptome155Y
F068831Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100471152F030758GGAMSTTDKNFKVKNGLNVAGEATFESNVVLGETPLRFDTATNKLQIQLNGTWTPIAFNSDIPDPASQISFMDIGLAIDYNGEPIYTVQANGVNPSETSKFVDGGSPSSADSDISMVFDSGVI
Ga0244775_100471154F068831GGAGGLATNYPASKDNLTNPASTESMEGHATLHGNVNDAIEAIETKLGVNGSTDTNSIDYKVTQLEQNLATLDSENASEILGLDGNNDLTIDGIENKTTIDSFSKSVYKTVEYKIQIDKQSGNLTTSSTVLILNDGTNVYMSESNIISNTGDTLGNITFEENSGIISLCVTPISGSIRVRYFKTALKA
Ga0244775_100471155F043932AGGAMAKKFKSLLNLLTLAEDPLVGSSGDVYFNVTSKNIKIYNGAIWVDLTPGSTDPAPFYMHTHSYDGNVHTVNLQETINFDTDINNNATVLETSPAIIGIDGGSPTSSYTNANYTQLTLLDGGQIGD
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