NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10045903

Scaffold Ga0244775_10045903


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10045903 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3825
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F003422Metagenome / Metatranscriptome487Y
F020171Metagenome / Metatranscriptome225Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100459032F020171AGGCGGMAEQFIDTIAEHITGAMMQEIGEELFDQWSYNNLEQGEAYAEFRFMEYASPELKQQYNEYYGYIEGDEFLL
Ga0244775_100459034F000450GGCGGMGDRANFGFVQPNGQTIVLYGHWAGHQMLGRLADAVIAARPRWNDEGYATRIAISQLIGDQWNMETGWGLYVNEIADNEHKIAIVDFRQQTFSLHEEAPHNDLDNKVRGMKNEAIFTQDLSAFCEKYALDNILTV
Ga0244775_100459037F000311GAGGMYFELTAPSQVAFERATWDAELLGLDPQQIGPLTFNIGTGSIEKVSRIRDKFNLTETYVSEYEQTGY
Ga0244775_100459038F003422AGGAMIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATITPSTQTKEEKMEDTVTSSAVTVPDTYNPNLLVTYKVIRGYSDAEYATDKVASLEWDLHNGRQSQKNVTTLQSKIATAKDIIAEAYADSLDQDTLRSIAEALGIELTRTIEFTATIEVSGTVEVDLLEDYELEDDIADNLYVDSQSGRIEIGDIEVCHVREA
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