| Basic Information | |
|---|---|
| Taxon OID | 3300024346 Open in IMG/M |
| Scaffold ID | Ga0244775_10035330 Open in IMG/M |
| Source Dataset Name | Whole water sample coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4424 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Columbia River Estuary | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000473 | Metagenome / Metatranscriptome | 1097 | Y |
| F002060 | Metagenome / Metatranscriptome | 597 | Y |
| F012975 | Metagenome / Metatranscriptome | 275 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244775_100353304 | F002060 | AGG | MQINYLSIIIAISAALVSGMGTAIIASLRESKKEERRRIERDQDLLKMDLKDLKIELYKIEKELTEWKDKYYNAIQELIEIKSELEATLIQLSHFEHDLDELDR |
| Ga0244775_100353306 | F000473 | AGG | MEFINKDKDHFKYGINQWTGEPIKPVFYNKEMALAVRGIKKPVVNLQMDIVKYPEFLCLRLYEDNFIQYTGNKKEMVIDYLQKVKKLIESYGVRCELEGVPSRKVLGQGL |
| Ga0244775_100353308 | F012975 | AGAAG | MERSRTKSQESFWENYDLLIWKQSAGGFTDVKGMFRKDKWGVAERISVNENGIWKLPVKYVRHFK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |