NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0244775_10032822

Scaffold Ga0244775_10032822


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10032822 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4612
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (100.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016661Metagenome245Y
F054351Metagenome / Metatranscriptome140Y
F065668Metagenome127N
F078585Metagenome116N
F079927Metagenome115N
F095309Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1003282210F016661GAGGMNYSAERYLALKQFEREQKRDKIRALLWNVSIGSIYAMAVIQVFTGVIS
Ga0244775_1003282212F054351AGGTGGMTKHTYSIVDADGYILLTVESQFTTRDFDTEAKLSIKPLLPVIAKQYGVDYVYYTNTFRKDK
Ga0244775_100328225F078585GGAGMSRYDDCGSYDYSDYCEGKGYYESYTEKPFDEDEASLRRIEAREETERLAKLYPPIGKQEMQERIKEVKTRLGAKYND
Ga0244775_100328226F079927GAGGMSKDYREQSQLEDEADEKYLTMYQYYKQLTDYERGEYDALHSYPFDESEESNKDYTEGFRQGYEYAQQMGANSNE
Ga0244775_100328228F065668AGGMLYTIWVGGVEVNSHLVSREEAYRIASNWRNDGYTDVIVERHKPYA
Ga0244775_100328229F095309AGGMNYAEYRNKLRKLSAKYNESYKQYGWGADTTRKLRQQKTDLRAKYAVHSFDYAVESLTSKGLL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.