| Basic Information | |
|---|---|
| Taxon OID | 3300024346 Open in IMG/M |
| Scaffold ID | Ga0244775_10024383 Open in IMG/M |
| Source Dataset Name | Whole water sample coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5446 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Columbia River Estuary | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001106 | Metagenome / Metatranscriptome | 776 | Y |
| F009961 | Metagenome / Metatranscriptome | 310 | Y |
| F012456 | Metagenome / Metatranscriptome | 280 | Y |
| F013303 | Metagenome / Metatranscriptome | 272 | Y |
| F057380 | Metagenome / Metatranscriptome | 136 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244775_100243831 | F013303 | N/A | VNNIKNTIDGVQKRVDAVESETAFKKSSDLGRSEEATTIKKSKWNGSFLGSVNEIFN |
| Ga0244775_100243833 | F001106 | AGGAG | MSFETLKVAEIRKIAEDFAVDTDGIKSKADIVAALAEEGVTWSVYQKTIKDIEDATDEFSENAEEIIPRFDPNAQPEDTVLVRMTRDNFRYDIDGFTFTKEHPFIAMTEDNAQEIFDKEEGFRLATPKEVQEYYN |
| Ga0244775_100243834 | F057380 | N/A | MAEIYVNSNSPIKTKIYWEGELITPSGVVTAKVYDITKDPTNVILPTTILSTINATAVETDIGTYQIVLPFSYSSYPRNFKLVWQYTVYGGAVGTHTTYVNVVTPYVNINEEIQDLNFGADPSDPGYKTYADLQSAERYARKIIEDFTGQDFYLYAGEESIYGNESDTLPLPSKLNRVYKIYSNDILLVDNLATPKVNNWLYDPIVSETGFAIRVNRTNLLDNAVYVANGLVPPTITDTFYGVFSKNVKYRVVGQFGWDSVPDKVQLATVELMKDYFSKDKVWRNKYIKSIKTFDWSFEYNASASRGTGNLYVDQLLNPYVITQMVLI |
| Ga0244775_100243836 | F012456 | GGAG | LDSSVALIQAASGLERLMAGSAPGIIKDSTVAQISAFLYYEAAVLSKLTSNAEFKNLFKSTIFNQIEKDFGQYVDAQARTKPKSLHHVYEWNKTGNPTARLFDLYLIDTGGLSFRIGRDFKLSKSAVPSKNLKQKRRYVFANKASVMEEGMPLVIRPRSAERLVFELDGRTVFMPKGSSVTVKRPGGKGATNQFALTYGRFFGGQLVNSSIKGSGFQRIFNAKIARALDVPINIKKVQYSFSAGKIRMQADAALSSSFGGSL |
| Ga0244775_100243837 | F009961 | GGAGG | MTVDYKIDAMFELRKFLWAQLKLNNMFNQNDYYSDNLGTEIVPIVPVQQLPEMDQFLNGKKHIVYDKIGLSYEENWLICCEKVLFTIYSTDITEIYEIRNLMTDLFRRMDESAKDVNGSKSTNKLIFHSIHITETSPIEPSQELQGFLSADVILEVKYSRVTDRLGRFS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |